forked:GenoCon Abstract Guide｜Mash up the Linked Open Data

forked:GenoCon Abstract Guide

function init(){
 sessionStorage.clear();
 $.each(LinkData.getWorks(),function(k, v){
	 $.each(LinkData.getFiles(v), function(fk, fv) {
	   loadData(v,fv);
	 });
 });
}

function getSequence(type,name){
  var data = JSON.parse(sessionStorage.getItem(type));
  var seq = data[name];
  return seq;
}

var map = {};

function reverseTranslation(ps) {
 var ns = "";
 var i = 0;
 for (i=0; i<ps.length;i++) {
 ns += map[ps.charAt(i)];
 }
 return ns;
}

window.onload = function() {
 init();
 // 1. Obtain protein sequences of HPS.
 // 1. HPSのたんぱく質配列を取得
 $("#result").append("[STEP 1]");
 var hpsSeq = getSequence("protein","http://www.uniprot.org/uniprot/Q9LBW4");
 $("#result").append("HPS Protein sequence has been obtained from LinkData " + hpsSeq + " ");
 // 2. Reverse translate the obtained protein sequences of HPS to DNA sequences.
 // 2. 取得したHPSのたんぱく質配列をDNA配列に逆翻訳
 $("#result").append("[STEP 2]");
 var hpsDnaSeq = reverseTranslation(hpsSeq);
 $("#result").append("HPS DNA Sequence has been generated " + hpsDnaSeq + " ");

// 3. Obtain protein sequences of PHI.
 // 3. PHIのたんぱく質配列を取得
 $("#result").append("[STEP 3]");
 var phiSeq = getSequence("protein","http://www.uniprot.org/uniprot/Q9LBW5");
 $("#result").append("PHI Protein sequence has been obtained from LinkData " + phiSeq + " ");
 
 // 4. Reverse-translate the obtained protein sequences of PHI to DNA sequences.
 // 4. 取得したPHIのたんぱく質配列をDNA配列に逆翻訳
 $("#result").append("[STEP 4]");
 var phiDnaSeq = reverseTranslation(phiSeq);
 $("#result").append("PHI DNA Sequence has been generated " + phiDnaSeq + " ");

// 5. Combine those two DNA sequences.
 // 5. ２つのDNA配列を結合
 $("#result").append("[STEP 5]");
 var dnaSeq = hpsDnaSeq + phiDnaSeq;
 $("#result").append("Designed sequence is " + dnaSeq + " ");
};

map.M = "atg";
map.F = "ttt";
map.L = "tta";
map.I = "att";
map.V = "gtt";
map.S = "tct";
map.P = "cct";
map.T = "act";
map.A = "gct";
map.Y = "tat";
map.H = "cat";
map.Q = "caa";
map.N = "aat";
map.K = "aaa";
map.D = "gat";
map.E = "gaa";
map.C = "tgt";
map.W = "tgg";
map.S = "agt";
map.R = "cgt";
map.G = "ggt";

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更新日:
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データ作品	テーブルデータ
GenoCon2 ChallengeB sample data 作者:GenoCon 更新日:2012年9月21日 2266 ダウンロード, 8 アプリケーション	dna promoter protein signal_peptide terminator

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Link http://app.linkdata.org/run/app1s88i?tab=readme

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